BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006G12LP1|AL425595
(461 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig171 176 4e-44
>3x_Contig171
Length = 902
Score = 176 bits (84), Expect = 4e-44
Identities = 122/133 (91%), Gaps = 4/133 (3%)
Strand = Plus / Plus
Query: 316 tcgtggaaaaccagcyatttgcgaaccmgatttgtctttcaccgcctaacacaactcatc 375
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 159 tcgtggtaaaccagctatttgcgaaccagatttgtctttcaccgcttaacacaactcatc 218
Query: 376 agatgatattgcaacatcaacctgattcgaccgtattccagacctggtcatattaagabc 435
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
Sbjct: 219 agatgatattgcaacatcaacctg-ttcgaccgt-ttcc--gtctggtcatattaagatc 274
Query: 436 gtccgctttcggg 448
|||||||||||||
Sbjct: 275 gtccgctttcggg 287
Score = 140 bits (67), Expect = 2e-33
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 190 tttcgagattaaataccyttgataaaataacaattattccccmaataatatttatvgccg 249
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || |
Sbjct: 33 tttcgagattaaatacctttgataaaataacaattattccccaaataatatttatagctg 92
Query: 250 taccattccttattattttat 270
|||||||| ||||||||||||
Sbjct: 93 taccattctttattattttat 113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.45 0.721 1.37
Gapped
Lambda K H
1.45 0.721 1.37
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2790
Number of Sequences: 1807
Number of extensions: 2790
Number of successful extensions: 166
Number of sequences better than 1.0e-20: 1
length of query: 461
length of database: 10,358,551
effective HSP length: 15
effective length of query: 446
effective length of database: 10,331,446
effective search space: 4607824916
effective search space used: 4607824916
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.3 bits)
S1: 11 (23.5 bits)
S2: 47 (98.8 bits)